Difference between revisions of "Folding of Electrostatically Charged Beads-on-a-String: An Experimental Realization of a Theoretical Model"
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==A Short-Chain RNA Model==
==A Short-Chain RNA Model==
Revision as of 21:55, 29 November 2011
Entry by Emily Redston, AP 225, Fall 2011
Work in progress
Folding of Electrostatically Charged Beads-on-a-String: An Experimental Realization of a Theoretical Model by Reches, M., Snyder, P.W., and Whitesides, G.M., Proc. Natl. Acad. Sci. USA, 2009, 106, 17644-17649.
The folding of linear polymers in solution is a subject of enormous importance in areas ranging from materials science to molecular biology. In exploring folding, theorists have developed models at every level of complexity. One of the simplest and most useful of these conceptual models is the “beads-on-a-string” model, a cornerstone of theoretical polymer science. This model represents each monomer of the polymer as a bead, and the backbone of the chain as a flexible string. It has been the basis for many computational models for folding. All theoretical models are, however, necessarily incomplete, and their failure to capture the full complexity of reality stimulates the development of more complex theory. Here the authors defied the conventional strategy of using complex theory to to try to rationalize an even more complex reality; they developed a very simple experimental system to match the simplest theory. They designed a physical model of beads-on-a-string, based on the folding of flexible strings of electrostatically charged beads in two dimensions.
Using a physical system composed of beads of two materials threaded in a defined sequence on a flexible Nylon string, they are able to examine the predictions of theoretical beads-on-a-string models. It is a very nice design for several reasons: (1) it is 2-D, (2) the interactions among the beads are electrostatic, (3) the shapes of the beads and properties of the string can be controlled, and (3) the agitation of the beads is well defined. Examination and comparison of two models—one physical and one theoretical—may offer a new approach to understanding folding, collapse, and molecular recognition at an abstract level, with particular opportunity to explore the influence of the flexibility of the string and the shape of the beads on the pattern and rate of folding. This system, although much simpler than molecular polymers in 3-D solution, and substantially different from molecules in a thermally agitated bath of solvent, still includes the inevitable nonlinearities of a real physical system. It is, thus, an analog computer designed to extend and to simulate 2-D calculations of beads-on-a-string models of polymer folding and collapse.
The system comprises millimeter-scale Teflon and Nylon-6,6 (spherical or cylindrical) beads (≈ 6 mm in diameter) separated by smaller (≈3 mm) poly(methyl methacrylate) (PMMA) spherical beads, threaded on a flexible string. The smaller, uncharged beads define the distances between the larger beads, and control the flexibility of the string. During agitation of the sequence of beads on a planar, horizontal paper surface, tribocharging generates opposite electrostatic charges on the larger Nylon and Teflon beads, but leaves the smaller PMMA beads essentially uncharged; the resulting electrostatic interactions cause the string to fold.