Difference between revisions of "Biofilms as complex fluids"

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==Biofilm Mechanics==
 
==Biofilm Mechanics==
  
By exploiting the relation between biofilms and soft matter (specifically the polymer-like behavior of the ECM), one can understand a great deal about how the bacteria is able to control the water content in the film. To maximize its entropy, an entangled polymer placed in contact with a reservoir of liquid will swell.  
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By exploiting the relation between biofilms and soft matter (specifically the polymer-like behavior of the ECM), one can understand a great deal about how the bacteria is able to control the water content in the biofilm. To maximize its entropy, an entangled polymer placed in contact with a reservoir of liquid will swell. If instead the polymer and reservoir are separated by a semi-permeable membrane that only allows water to pass through, the poymer will exert on osmotic pressure,<math>\Pi</math>, on the membrane. The polymer swells and strands between cross-links are stretched out. Eventually <math>\Pi</math> is balanced by the elastic shear modulus of the gel, <math>G_{E}</math>. Thus there is an equilibrium water content in the biofilm for a given polymer concentration and cross-link density in the ECM.
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==Viscoelasticity==
 
==Viscoelasticity==

Revision as of 01:49, 12 September 2011

Entry by Emily Redston, AP 225, Fall 2011

Work in progress

Reference

Biofilms as Complex Fluids by J. N. Wilking, T. E. Angelini, A. Seminara, M. P. Brenner, and D. A. Weitz. MRS Bulletin, 26, 385-391 (2011)

Introduction

Bacterial biofilms can be found on nearly every surface as long as there is moisture and nutrients. They can have a positive impact in areas such as water treatment and waste sequestration, but they also play a devastating role in many bacteria-related problems like tooth decay and hospital-acquired infections. A better understanding of the structure, mechanics, and dynamics of biofilms is necessary for both their removal and for the optimization of their properties.

Viewing biofilms as a complex fluid is a good starting point for analyzing their structure and properties. A bioflim can be seen as a composite of colloids (bacterial cells) embedded in a cross-linked polymer gel (extracellular matrix -- ECM).

Biofilm Structure

Bacterial cells are rigid and have well-defined shapes like spheres or rods. Since the bacteria within a biofilm are mostly sessile and cannot generate forces outside of the cell, they control the structural and mechanical properties of the biofilm by regulating the composition of the ECM. The ECM is primarily composed of polysaccharides cross-linked by proteins and multivalent cations. This matrix is the scaffold that holds the bacteria together; it gives the biofilm its mechanical integrety.

Unfortunately, it is difficult to get a full picture of the biofilm material properties due to the highly variably nature of the ECM. The ECM is often composed of multiple species, so it is poorly understood.

Biofilm Mechanics

By exploiting the relation between biofilms and soft matter (specifically the polymer-like behavior of the ECM), one can understand a great deal about how the bacteria is able to control the water content in the biofilm. To maximize its entropy, an entangled polymer placed in contact with a reservoir of liquid will swell. If instead the polymer and reservoir are separated by a semi-permeable membrane that only allows water to pass through, the poymer will exert on osmotic pressure,<math>\Pi</math>, on the membrane. The polymer swells and strands between cross-links are stretched out. Eventually <math>\Pi</math> is balanced by the elastic shear modulus of the gel, <math>G_{E}</math>. Thus there is an equilibrium water content in the biofilm for a given polymer concentration and cross-link density in the ECM.


Viscoelasticity

Conclusion